3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00884

Details:

PFam ID : PF00884

PFam Domain Description : Sulfatase

Number of Sequence in 50% Dataset : 1919

Number of Sequence in Full Dataset : 6419

Average sequence length: 371.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00884	C0FUV4_9FIRM_158_413	91.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00884	E9ANY7_LEIME_169_490	99.5

Sequence based PCA Plot of the family - PF00884 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=165 Length=8
Motif2 Start=27 Length=8
Motif3 Start=180 Length=11
Motif4 Start=151 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay