3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03862

Details:

PFam ID : PF03862

PFam Domain Description : SpoVA protein

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 327

Average sequence length: 114.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03862	A8S191_9CLOT_4_126	58.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03862	A8S191_9CLOT_4_126	100

Sequence based PCA Plot of the family - PF03862 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=25 Length=8
Motif2 Start=7 Length=17
Motif3 Start=61 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay