3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09548

Details:

PFam ID : PF09548

PFam Domain Description : Stage III sporulation protein AB (spore_III_AB)

Number of Sequence in 50% Dataset : 78

Number of Sequence in Full Dataset : 134

Average sequence length: 164.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09548	E6UIW0_RUMA7_3_157	84.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09548	D7GUK4_9FIRM_2_178	100

Sequence based PCA Plot of the family - PF09548 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=112 Length=8
Motif2 Start=40 Length=8
Motif3 Start=1 Length=8
Motif4 Start=150 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay