3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05669

Details:

PFam ID : PF05669

PFam Domain Description : SOH1

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 121

Average sequence length: 101.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05669	B8M824_TALSN_8_105	10

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05669	C6LS10_GIAIB_6_115	100

Sequence based PCA Plot of the family - PF05669 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=31 Length=23
Motif2 Start=2 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay