3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12931

Details:

PFam ID : PF12931

PFam Domain Description : Sec23-binding domain of Sec16

Number of Sequence in 50% Dataset : 78

Number of Sequence in Full Dataset : 272

Average sequence length: 236.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12931	E9ALV0_LEIME_1285_1460	80.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12931	E2B2L2_9HYME_557_850	100

Sequence based PCA Plot of the family - PF12931 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=24 Length=8
Motif3 Start=116 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay