3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14322

Details:

PFam ID : PF14322

PFam Domain Description : Starch-binding associating with outer membrane

Number of Sequence in 50% Dataset : 1193

Number of Sequence in Full Dataset : 2971

Average sequence length: 202.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14322	D0LLA6_HALO1_94_232	99.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14322	E6X5I3_CELAD_23_284	100

Sequence based PCA Plot of the family - PF14322 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=131 Length=8
Motif2 Start=86 Length=14
Motif3 Start=17 Length=8
Motif4 Start=44 Length=23

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay