3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14397

Details:

PFam ID : PF14397

PFam Domain Description : Sugar-transfer associated ATP-grasp

Number of Sequence in 50% Dataset : 74

Number of Sequence in Full Dataset : 180

Average sequence length: 263.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14397	A4TZ19_9PROT_172_394	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14397	D8JU51_HYPDA_55_364	100

Sequence based PCA Plot of the family - PF14397 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=75 Length=11
Motif2 Start=202 Length=8
Motif3 Start=137 Length=8
Motif4 Start=252 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay