3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05422

Details:

PFam ID : PF05422

PFam Domain Description : Stress-activated map kinase interacting protein 1 (SIN1)

Number of Sequence in 50% Dataset : 78

Number of Sequence in Full Dataset : 172

Average sequence length: 235.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05422	C3ZCQ5_BRAFL_1_86	33.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05422	E9P9X0_YEASX_3_289	88

Sequence based PCA Plot of the family - PF05422 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=123 Length=8
Motif2 Start=354 Length=8
Motif3 Start=88 Length=8
Motif4 Start=294 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay