3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00537

Details:

PFam ID : PF00537

PFam Domain Description : Scorpion toxin-like domain

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 246

Average sequence length: 52.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00537	B8XH02_BUTOS_24_75	23.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00537	Q95P87_MESMA_2_35	90.6

Sequence based PCA Plot of the family - PF00537 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=35 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay