3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03110

Details:

PFam ID : PF03110

PFam Domain Description : SBP domain

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 236

Average sequence length: 72.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03110	D8UG66_VOLCA_1_57	70.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03110	C1FG73_MICSR_77_163	99.5

Sequence based PCA Plot of the family - PF03110 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=17 Length=17
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay