3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12887

Details:

PFam ID : PF12887

PFam Domain Description : SICA extracellular alpha domain

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 102

Average sequence length: 179

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12887	B3L022_PLAKH_42_222	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12887	B3L5Q3_PLAKH_10_184	100

Sequence based PCA Plot of the family - PF12887 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=85 Length=8
Motif3 Start=111 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay