3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06426

Details:

PFam ID : PF06426

PFam Domain Description : Serine acetyltransferase, N-terminal

Number of Sequence in 50% Dataset : 62

Number of Sequence in Full Dataset : 479

Average sequence length: 84.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06426	B8LD02_THAPS_2_43	85.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06426	E7C1S8_9GAMM_6_113	100

Sequence based PCA Plot of the family - PF06426 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=79 Length=11
Motif2 Start=2 Length=18
Motif3 Start=97 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay