3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07876

Details:

PFam ID : PF07876

PFam Domain Description : Stress responsive A/B Barrel Domain

Number of Sequence in 50% Dataset : 186

Number of Sequence in Full Dataset : 730

Average sequence length: 96.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07876	E7M4W8_9BACL_1_49	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07876	B6T8H2_MAIZE_7_65	100

Sequence based PCA Plot of the family - PF07876 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=30 Length=8
Motif2 Start=21 Length=8
Motif3 Start=12 Length=8
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay