3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08281

Details:

PFam ID : PF08281

PFam Domain Description : Sigma-70, region 4

Number of Sequence in 50% Dataset : 551

Number of Sequence in Full Dataset : 9173

Average sequence length: 53.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08281	B7UF77_YERPS_7_59	83.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08281	A9B1W5_HERA2_139_192	100

Sequence based PCA Plot of the family - PF08281 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=26 Length=29
Motif2 Start=11 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay