3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08243

Details:

PFam ID : PF08243

PFam Domain Description : SPT2 chromatin protein

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 127

Average sequence length: 105.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08243	D2VH34_NAEGR_332_464	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08243	D2VH34_NAEGR_332_464	100

Sequence based PCA Plot of the family - PF08243 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=108 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay