3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02404

Details:

PFam ID : PF02404

PFam Domain Description : Stem cell factor

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 28

Average sequence length: 131.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02404	F1RDP0_DANRE_5_151	53.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02404	C7BCR5_CARAU_1_242	100

Sequence based PCA Plot of the family - PF02404 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay