3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00106

Details:

PFam ID : PF00106

PFam Domain Description : short chain dehydrogenase

Number of Sequence in 50% Dataset : 4327

Number of Sequence in Full Dataset : 31117

Average sequence length: 161.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00106	B1VLZ6_STRGG_57_111	86.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00106	B2WPB9_PYRTR_1729_1788	99.9

Sequence based PCA Plot of the family - PF00106 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=110 Length=8
Motif2 Start=5 Length=11
Motif3 Start=98 Length=8
Motif4 Start=66 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay