3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00083

Details:

PFam ID : PF00083

PFam Domain Description : Sugar (and other) transporter

Number of Sequence in 50% Dataset : 2714

Number of Sequence in Full Dataset : 11017

Average sequence length: 353.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00083	C5WRD8_SORBI_2_60	95.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00083	A2EFT1_TRIVA_1_90	99.5

Sequence based PCA Plot of the family - PF00083 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=21
Motif2 Start=40 Length=11
Motif3 Start=54 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay