3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12419

Details:

PFam ID : PF12419

PFam Domain Description : SNF2 Helicase protein

Number of Sequence in 50% Dataset : 84

Number of Sequence in Full Dataset : 246

Average sequence length: 139.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12419	E6TXZ3_BACCJ_302_434	90.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12419	C8RPZ4_CORJE_336_494	100

Sequence based PCA Plot of the family - PF12419 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8
Motif3 Start=31 Length=11
Motif4 Start=110 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay