3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05486

Details:

PFam ID : PF05486

PFam Domain Description : Signal recognition particle 9 kDa protein (SRP9)

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 111

Average sequence length: 82.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05486	A4RST4_OSTLU_5_74	24.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05486	A8QB16_MALGO_3_74	100

Sequence based PCA Plot of the family - PF05486 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=30
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay