3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10319

Details:

PFam ID : PF10319

PFam Domain Description : Serpentine type 7TM GPCR chemoreceptor Srj

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 121

Average sequence length: 251.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10319	E3LL62_CAERE_2_331	68.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10319	Q9XTR3_CAEEL_1_310	100

Sequence based PCA Plot of the family - PF10319 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=266 Length=8
Motif2 Start=22 Length=8
Motif3 Start=311 Length=8
Motif4 Start=116 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay