3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05221

Details:

PFam ID : PF05221

PFam Domain Description : S-adenosyl-L-homocysteine hydrolase

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 805

Average sequence length: 411.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05221	Y102_MYCPN_140_267	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05221	D7SNS1_VITVI_44_243	99.8

Sequence based PCA Plot of the family - PF05221 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=143 Length=11
Motif2 Start=326 Length=8
Motif3 Start=258 Length=8
Motif4 Start=208 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay