3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03058

Details:

PFam ID : PF03058

PFam Domain Description : Sar8.2 family

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 18

Average sequence length: 71.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03058	E3M8Z8_CAERE_144_187	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03058	O04183_TOBAC_1_54	100

Sequence based PCA Plot of the family - PF03058 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=18 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay