3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07660

Details:

PFam ID : PF07660

PFam Domain Description : Secretin and TonB N terminus short domain

Number of Sequence in 50% Dataset : 303

Number of Sequence in Full Dataset : 1428

Average sequence length: 50.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07660	Q1IQC9_ACIBL_107_123	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07660	D8FE10_9DELT_303_374	87

Sequence based PCA Plot of the family - PF07660 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay