3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08231

Details:

PFam ID : PF08231

PFam Domain Description : SYF2 splicing factor

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 133

Average sequence length: 145.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08231	E3K8V6_PUCGT_77_251	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08231	Q5CJ88_CRYHO_77_224	100

Sequence based PCA Plot of the family - PF08231 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=87 Length=8
Motif4 Start=70 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay