3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09032

Details:

PFam ID : PF09032

PFam Domain Description : Siah interacting protein, N terminal

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 64

Average sequence length: 66.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09032	C3Z811_BRAFL_1_82	7.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09032	C3Z811_BRAFL_1_82	98.4

Sequence based PCA Plot of the family - PF09032 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay