3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03876

Details:

PFam ID : PF03876

PFam Domain Description : SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397

Number of Sequence in 50% Dataset : 86

Number of Sequence in Full Dataset : 401

Average sequence length: 72.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03876	E6RBV5_CRYGW_78_146	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03876	A0CNJ0_PARTE_9_85	83

Sequence based PCA Plot of the family - PF03876 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=58 Length=8
Motif2 Start=44 Length=8
Motif3 Start=8 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay