3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01941

Details:

PFam ID : PF01941

PFam Domain Description : S-adenosylmethionine synthetase (AdoMet synthetase)

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 134

Average sequence length: 388.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01941	A8LZA0_SALAI_1_79	90

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01941	D6GWW7_9EURY_1_402	100

Sequence based PCA Plot of the family - PF01941 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=20
Motif2 Start=1 Length=8
Motif3 Start=54 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay