3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05364

Details:

PFam ID : PF05364

PFam Domain Description : Salmonella type III secretion SopE effector N-terminus

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 6

Average sequence length: 51.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05364	Q5Y0N0_9ALPH_1_74	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05364	Q8GCQ5_SALET_1_62	100

Sequence based PCA Plot of the family - PF05364 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay