3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03313

Details:

PFam ID : PF03313

PFam Domain Description : Serine dehydratase alpha chain

Number of Sequence in 50% Dataset : 96

Number of Sequence in Full Dataset : 1110

Average sequence length: 287.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03313	C0AYJ0_9ENTR_1_129	67.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03313	E4HD74_PROAC_190_390	99.5

Sequence based PCA Plot of the family - PF03313 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=14 Length=8
Motif2 Start=235 Length=17
Motif3 Start=195 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay