3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09408

Details:

PFam ID : PF09408

PFam Domain Description : Spike receptor binding domain

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 46

Average sequence length: 180.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09408	Q5GDJ5_CVHSA_317_383	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09408	SPIKE_CVP67_326_526	100

Sequence based PCA Plot of the family - PF09408 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=8
Motif2 Start=27 Length=8
Motif3 Start=1 Length=8
Motif4 Start=18 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay