3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13624

Details:

PFam ID : PF13624

PFam Domain Description : SurA N-terminal domain

Number of Sequence in 50% Dataset : 471

Number of Sequence in Full Dataset : 1035

Average sequence length: 151.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13624	D9XWN2_9ACTO_7_121	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13624	A4XH77_CALS8_3_196	100

Sequence based PCA Plot of the family - PF13624 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=43 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay