3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02104

Details:

PFam ID : PF02104

PFam Domain Description : SURF1 family

Number of Sequence in 50% Dataset : 235

Number of Sequence in Full Dataset : 740

Average sequence length: 208.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02104	A0CX17_PARTE_36_290	99.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02104	A8JF96_CHLRE_60_352	100

Sequence based PCA Plot of the family - PF02104 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=72 Length=8
Motif2 Start=47 Length=11
Motif3 Start=1 Length=8
Motif4 Start=241 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay