3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08712

Details:

PFam ID : PF08712

PFam Domain Description : Scaffold protein Nfu/NifU N terminal

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 444

Average sequence length: 86.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08712	D8LGF0_ECTSI_49_148	73.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08712	D8LGF0_ECTSI_49_148	100

Sequence based PCA Plot of the family - PF08712 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=35 Length=8
Motif2 Start=16 Length=8
Motif3 Start=1 Length=8
Motif4 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay