3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12470

Details:

PFam ID : PF12470

PFam Domain Description : Suppressor of Fused Gli/Ci N terminal binding domain

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 30

Average sequence length: 159.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12470	B0W2C6_CULQU_242_433	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12470	E0VUP1_PEDHC_241_472	100

Sequence based PCA Plot of the family - PF12470 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=111 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay