3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01564

Details:

PFam ID : PF01564

PFam Domain Description : Spermine/spermidine synthase

Number of Sequence in 50% Dataset : 243

Number of Sequence in Full Dataset : 1289

Average sequence length: 213.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01564	Q21JF3_SACD2_47_264	69.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01564	B1QAS1_CLOBO_29_69	99.9

Sequence based PCA Plot of the family - PF01564 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=84 Length=17
Motif2 Start=28 Length=8
Motif3 Start=10 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay