3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03276

Details:

PFam ID : PF03276

PFam Domain Description : Spumavirus gag protein

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 25

Average sequence length: 320.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03276	B4HBJ4_DROPE_67_155	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03276	D5JWV0_9RETR_1_611	100

Sequence based PCA Plot of the family - PF03276 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay