3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02037

Details:

PFam ID : PF02037

PFam Domain Description : SAP domain

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 949

Average sequence length: 34.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02037	Q31IM6_THICR_23_115	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02037	E1GFE1_LOALO_92_126	90.0

Sequence based PCA Plot of the family - PF02037 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=2 Length=8
Motif2 Start=20 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay