3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06525 Details: PFam ID : PF06525 PFam Domain Description : Sulfocyanin (SoxE) Number of Sequence in 50% Dataset : 19 Number of Sequence in Full Dataset : 38 Average sequence length: 150.2 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF06525A4TG84_MYCGI_132_25777.7 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF06525A8I5N8_CHLRE_107_200100 Sequence based PCA Plot of the family - PF06525 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=10 Length=11Motif2 Start=1 Length=8Motif3 Start=100 Length=8Motif4 Start=111 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF06525
PFam Domain Description : Sulfocyanin (SoxE)
Number of Sequence in 50% Dataset : 19
Number of Sequence in Full Dataset : 38
Average sequence length: 150.2
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER