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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06525
Details:

PFam ID : PF06525

PFam Domain Description : Sulfocyanin (SoxE)

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 38

Average sequence length: 150.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF06525A4TG84_MYCGI_132_25777.7
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF06525A8I5N8_CHLRE_107_200100
Sequence based PCA Plot of the family - PF06525 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8
Motif3 Start=100 Length=8
Motif4 Start=111 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay