3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10323

Details:

PFam ID : PF10323

PFam Domain Description : Serpentine type 7TM GPCR chemoreceptor Srv

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 120

Average sequence length: 231.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10323	B6IG44_CAEBR_7_48	31.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10323	SRV1_CAEEL_16_290	98.3

Sequence based PCA Plot of the family - PF10323 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=33 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay