3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10646

Details:

PFam ID : PF10646

PFam Domain Description : Sporulation and spore germination

Number of Sequence in 50% Dataset : 305

Number of Sequence in Full Dataset : 617

Average sequence length: 115.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10646	D5GF49_TUBMM_31_75	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10646	B9M0R5_GEOSF_56_162	99.3

Sequence based PCA Plot of the family - PF10646 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=65 Length=8
Motif3 Start=81 Length=8
Motif4 Start=95 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay