3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14097

Details:

PFam ID : PF14097

PFam Domain Description : Stage V sporulation protein AE1

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 34

Average sequence length: 174.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14097	B7DQX7_9BACL_7_187	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14097	B7DQX7_9BACL_7_187	100

Sequence based PCA Plot of the family - PF14097 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=25 Length=11
Motif2 Start=2 Length=8
Motif3 Start=54 Length=8
Motif4 Start=148 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay