3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04268

Details:

PFam ID : PF04268

PFam Domain Description : Sarcosine oxidase, gamma subunit family

Number of Sequence in 50% Dataset : 71

Number of Sequence in Full Dataset : 283

Average sequence length: 145.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04268	B6BQA5_9RICK_53_189	70

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04268	Q1UZB9_PELUB_31_186	100

Sequence based PCA Plot of the family - PF04268 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=21 Length=8
Motif3 Start=86 Length=8
Motif4 Start=42 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay