3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08492

Details:

PFam ID : PF08492

PFam Domain Description : SRP72 RNA-binding domain

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 145

Average sequence length: 65.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08492	A7AWU7_BABBO_587_668	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08492	F0ZL27_DICPU_531_598	100

Sequence based PCA Plot of the family - PF08492 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=66 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay