3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08806

Details:

PFam ID : PF08806

PFam Domain Description : Sep15/SelM redox domain

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 67

Average sequence length: 72.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08806	B5RBH4_SALG2_43_122	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08806	D0NYQ1_PHYIT_102_178	100

Sequence based PCA Plot of the family - PF08806 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay