3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07093

Details:

PFam ID : PF07093

PFam Domain Description : SGT1 protein

Number of Sequence in 50% Dataset : 97

Number of Sequence in Full Dataset : 164

Average sequence length: 467.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07093	A8J300_CHLRE_1_180	93.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07093	Q6CKE3_KLULA_35_362	96.9

Sequence based PCA Plot of the family - PF07093 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=203 Length=11
Motif2 Start=56 Length=8
Motif3 Start=88 Length=8
Motif4 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay