3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12477

Details:

PFam ID : PF12477

PFam Domain Description : Sex factor F TraW protein N terminal

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 40

Average sequence length: 29.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12477	D0Z4T1_LISDA_6_36	36.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12477	E6WLU5_PANSA_4_33	97.4

Sequence based PCA Plot of the family - PF12477 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=19 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay