3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10796

Details:

PFam ID : PF10796

PFam Domain Description : Sigma-S stabilisation anti-adaptor protein

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 36

Average sequence length: 82.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10796	YSCR_VIBAL_1_99	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10796	C6D9H6_PECCP_1_87	97.1

Sequence based PCA Plot of the family - PF10796 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay