3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13509

Details:

PFam ID : PF13509

PFam Domain Description : S1 domain

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 550

Average sequence length: 61.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13509	F0XEV4_9PEZI_1_54	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13509	Q4EF93_LISMO_1_55	98.1

Sequence based PCA Plot of the family - PF13509 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=21
Motif2 Start=43 Length=8
Motif3 Start=63 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay