3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00999

Details:

PFam ID : PF00999

PFam Domain Description : Sodium/hydrogen exchanger family

Number of Sequence in 50% Dataset : 1161

Number of Sequence in Full Dataset : 5357

Average sequence length: 364.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00999	E7KZR2_TRYCR_185_429	91.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00999	A7EE02_SCLS1_13_522	99.5

Sequence based PCA Plot of the family - PF00999 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=27 Length=8
Motif2 Start=9 Length=17
Motif3 Start=100 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay